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Commonplace Book

A collection of interactive experiments, research, and tools.

Teaching

NBL 425/625 Methods in Human Neuroimaging Updated Oct 11, 2026 Diagnostic Biomarker Systems Course Project Timeline (IDNE 701) Updated Sep 11, 2026 Neuroengineering Research Center Design Project Timeline (IDNE 702) Updated Mar 25, 2026 Affinity Mapping In-Class Idea Clustering & Themes Added Sep 24, 2026 Interactive Quizzes Self-Assessments & Review Updated Sep 20, 2026 MRI Safety Training Documentation & Quiz Updated Dec 15, 2025

MR & Imaging

MRI Simulator Sequences, k-space, Artifacts & MRS at 3 T Added Oct 10, 2026 PET Simulator Protocols, Sinograms, Corrections & Kinetic Modelling Added Oct 11, 2026

MRS Resources Spectroscopy Materials (31P, 13C, Xe) MR Periodic Chart Modelling Spectra Updated Sep 19, 2026

Ferroquant MRI & Iron Quantification Subdural Hematoma Added Mar 13, 2026

NMR Relaxation Proton Dynamics Simulation Updated Dec 23, 2025 Spins Quantum Physics Demo Updated Dec 23, 2025 PET Scanner Simulator Coincidence Physics & Image Reconstruction Updated Sep 20, 2026 EEG Simulator Volume Conduction, Artifacts & ERP Analysis Added Oct 10, 2026 MEG Simulator Magnetic Fields, Shielding & Source Estimation Updated Oct 12, 2026 fNIRS Simulator Light Transport, Beer-Lambert & Short-Channel Regression Added Oct 11, 2026 Neuroimaging Key Dichotomous Identification Tool Added Jan 6, 2026 Ernst Angle Calculator MRI Utility Added Mar 10, 2026 13C Carrier Calculator Siemens Prisma MRS Utility Added Oct 2, 2026 129Xe Frequency Calculator Hyperpolarized Xenon MRI Utility Added Oct 2, 2026

Neuroscience & Neuroengineering

Neuroengineering Knowledge Base Framework What Is Neuroengineering? TMS vs. FUS Updated Sep 15, 2026

Neural Plasticity Synaptic Plasticity Figures STDP Hebbian Assemblies LIF Neuron Updated Sep 20, 2026

Flash Lag Effect Perception Experiment Added Aug 30, 2024 OpenAxon Agentic Neuroimaging Framework Added Dec 19, 2025

Math & Complex Systems

All the Math You Missed Interactive Math Examples Updated Mar 26, 2026 Vector Field Explorer Interactive Vector Calculus Added Dec 23, 2025

Flocking Behavior Flocking Simulation with Graph Theory Predator-Prey Flocking Updated Mar 22, 2026

Fourier Analysis Mathematical Visualization Updated Jan 8, 2026 Self-Organized Criticality Power Laws & Chaos Edge Added Jan 12, 2026 Graph Automata A Language for Cellular Automata on Digraphs Added Sep 12, 2026 Lateral Flow Dynamics Group Information Flow Updated Jan 16, 2026 Workspace Topology Topology Simulator Updated Jan 16, 2026

Regularium Interactive Regex Course NFA Visualization Added Jan 19, 2026

Tools

Diagnostic Calculator Sensitivity, Specificity & PPV Added Jan 12, 2026 Scientific Calculator Web Utility Updated Dec 23, 2025 Quick Note Local Storage Notes Added Dec 23, 2025 Mind Map Touch Friendly Brainstorming Tool Updated Sep 19, 2026 Mermaid Editor Diagram Tool Added Dec 23, 2025 Mermaid Exporter Diagram Export Tool Updated Jan 11, 2026 VS Code Cheat Sheet Reference Updated Jan 28, 2026 Design Process Methodology Documentation Added Dec 14, 2025

Events & Outreach

CNBCI Pilot Program 2026 Internal RFA Updated Mar 12, 2026 CNBCI Travel Award Student Travel Flyer Added Mar 5, 2026 Neurotech Workshop Flyer / Nov 2025 Updated Dec 23, 2025 Neuroengineering PhD Recruitment Flyer Updated Dec 23, 2025 CNBCI Catalyst 2026 Internal RFA Added Nov 4, 2025 CNBCI Spark 2025 Internal RFA Added Nov 4, 2025 Presentations Slides & Talks Updated Mar 23, 2026

Just for Fun

Cozy Desktop Dashboard UI Updated Jan 28, 2026 Typing Test Skill Practice Added Dec 23, 2025 Forge RPG Mechanics Language Added Sep 12, 2026 Tax Calculator Web Utility Added Dec 23, 2025

More

Archive Writing, adventures, personal projects → Updated Sep 21, 2026